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1

Complete nitrification by Nitrospira bacteria

Daims, Holger, Lebedeva, Elena V., Pjevac, Petra, Han, Ping, Herbold, Craig, Albertsen, Mads, Jehmlich, Nico, Palatinszky, Marton, Vierheilig, Julia, Bulaev, Alexandr, Kirkegaard, Rasmus H., Bergen, M

Journal:

Year:

2015

Language:

english

File:

PDF, 5.09 MB

english, 2015

2

The cooling tower water microbiota: Seasonal dynamics and co-occurrence of bacterial and protist phylotypes

Tsao, Han-Fei, Scheikl, Ute, Herbold, Craig, Indra, Alexander, Walochnik, Julia, Horn, Matthias

Journal:

Year:

2019

Language:

english

File:

PDF, 8.80 MB

english, 2019

3

Local and regional influences over soil microbial metacommunities in the Transantarctic Mountains

Sokol, Eric R., Herbold, Craig W., Lee, Charles K., Cary, S. Craig, Barrett, J. E.

Journal:

Year:

2013

Language:

english

File:

PDF, 3.10 MB

english, 2013

4

Genomic Insights Into the Acid Adaptation of Novel Methanotrophs Enriched From Acidic Forest Soils

Nguyen, Ngoc-Loi, Yu, Woon-Jong, Gwak, Joo-Han, Kim, So-Jeong, Park, Soo-Je, Herbold, Craig W., Kim, Jong-Geol, Jung, Man-Young, Rhee, Sung-Keun

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 5.83 MB

english, 2018

5

Influence of soil properties on archaeal diversity and distribution in the McMurdo Dry Valleys, Antarctica

Richter, Ingrid, Herbold, Craig W., Lee, Charles K., McDonald, Ian R., Barrett, John E., Cary, Stephen C.

Journal:

FEMS Microbiology Ecology

Year:

2014

Language:

english

File:

PDF, 455 KB

english, 2014

6

Evidence for a New Root of the Tree of Life

Lake, James, Servin, Jacqueline, Herbold, Craig, Skophammer, Ryan

Journal:

Systematic Biology

Year:

2008

Language:

english

File:

PDF, 255 KB

english, 2008

7

Cyanate and urea are substrates for nitrification by Thaumarchaeota in the marine environment

Kitzinger, Katharina, Padilla, Cory C., Marchant, Hannah K., Hach, Philipp F., Herbold, Craig W., Kidane, Abiel T., Könneke, Martin, Littmann, Sten, Mooshammer, Maria, Niggemann, Jutta, Petrov, Sandra

Journal:

Nature Microbiology

Year:

2018

Language:

english

File:

PDF, 1.82 MB

english, 2018

8

Soil multifunctionality is affected by the soil environment and by microbial community composition and diversity

Zheng, Qing, Hu, Yuntao, Zhang, Shasha, Noll, Lisa, Böckle, Theresa, Dietrich, Marlies, Herbold, Craig W., Eichorst, Stephanie A., Woebken, Dagmar, Richter, Andreas, Wanek, Wolfgang

Journal:

Soil Biology and Biochemistry

Year:

2019

Language:

english

File:

PDF, 1.38 MB

english, 2019

9

Salt marsh submarine groundwater discharge as traced by radium isotopes

Matthew A. Charette, Richard Splivallo, Craig Herbold, Marsha S. Bollinger, Willard S. Moore

Journal:

Marine Chemistry

Year:

2003

Language:

english

File:

PDF, 205 KB

english, 2003

10

Cytochrome c unfolding on an anionic surface

Craig W Herbold, John H Miller, Steven C Goheen

Journal:

Journal of Chromatography A

Year:

1999

Language:

english

File:

PDF, 293 KB

english, 1999

11

Characterisation of bacterioplankton communities in the meltwater ponds of Bratina Island, Victoria Land, Antarctica

Archer, Stephen D.J., McDonald, Ian R., Herbold, Craig W., Cary, Stephen C.

Journal:

FEMS Microbiology Ecology

Year:

2014

Language:

english

File:

PDF, 752 KB

english, 2014

12

Evidence of global-scale aeolian dispersal and endemism in isolated geothermal microbial communities of Antarctica

Herbold, Craig W., Lee, Charles K., McDonald, Ian R., Cary, S. Craig

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 680 KB

english, 2014

13

Cyanate as an energy source for nitrifiers

Palatinszky, Marton, Herbold, Craig, Jehmlich, Nico, Pogoda, Mario, Han, Ping, von Bergen, Martin, Lagkouvardos, Ilias, Karst, Søren M., Galushko, Alexander, Koch, Hanna, Berry, David, Daims, Holger,

Journal:

Year:

2015

Language:

english

File:

PDF, 3.31 MB

english, 2015

14

Dissolved Iron Cycling in the Subterranean Estuary of a Coastal Bay: Waquoit Bay, Massachusetts

Jeremy M. Testa, Matthew A. Charette, Edward R. Sholkovitz, Matt C. Allen, Adam Rago and Craig W. Herbold

Journal:

Biological Bulletin

Year:

2002

Language:

english

File:

PDF, 369 KB

english, 2002

15

Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus Nitrospira

Koch, Hanna, Lücker, Sebastian, Albertsen, Mads, Kitzinger, Katharina, Herbold, Craig, Spieck, Eva, Nielsen, Per Halkjaer, Wagner, Michael, Daims, Holger

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 753 KB

english, 2015

16

Temporal, regional and geochemical drivers of microbial community variation in the melt ponds of the Ross Sea region, Antarctica

Archer, Stephen D. J., McDonald, Ian R., Herbold, Craig W., Lee, Charles K., Niederberger, Thomas S., Cary, Craig

Journal:

Year:

2016

Language:

english

File:

PDF, 1.06 MB

english, 2016

17

Biotransformation of two pharmaceuticals by the ammonia-oxidizing archaeon Nitrososphaera gargensis

Men, Yujie, Han, Ping, Helbling, Damian E., Jehmlich, Nico, Herbold, Craig, Gulde, Rebekka, Onnis-Hayden, Annalisa, Gu, April Z, Johnson, David R., Wagner, Michael, Fenner, Kathrin

Journal:

Environmental Science & Technology

Year:

2016

Language:

english

File:

PDF, 452 KB

english, 2016

18

Insights into the metabolism of the high temperature microbial community of Tramway Ridge, Mount Erebus, Antarctica

Vickers, Chelsea J., Herbold, Craig W., Cary, S. Craig, Mcdonald, Ian R.

Journal:

Antarctic Science

Year:

2016

Language:

english

File:

PDF, 277 KB

english, 2016

19

Diversity analysis of sulfite- and sulfate-reducing microorganisms by multiplex dsrA and dsrB amplicon sequencing using new primers and mock community-optimized bioinformatics

Pelikan, Claus, Herbold, Craig W., Hausmann, Bela, Müller, Albert L., Pester, Michael, Loy, Alexander

Journal:

Environmental Microbiology

Year:

2016

Language:

english

File:

PDF, 1.01 MB

english, 2016

20

The Network of Life: Genome Beginnings and Evolution || Genome Beginnings: Rooting the Tree of Life

James A. Lake, Ryan G. Skophammer, Craig W. Herbold and Jacqueline A. Servin

Journal:

Philosophical Transactions Biological Sciences

Year:

2009

Language:

english

File:

PDF, 1.49 MB

english, 2009

21

Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation

Petersen, Jillian M., Kemper, Anna, Gruber-Vodicka, Harald, Cardini, Ulisse, van der Geest, Matthijs, Kleiner, Manuel, Bulgheresi, Silvia, Mußmann, Marc, Herbold, Craig, Seah, Brandon K.B., Antony, Ch

Journal:

Nature Microbiology

Year:

2016

Language:

english

File:

PDF, 624 KB

english, 2016

22

Application of stable-isotope labelling techniques for the detection of active diazotrophs

Angel, Roey, Panhölzl, Christopher, Gabriel, Raphael, Herbold, Craig, Wanek, Wolfgang, Richter, Andreas, Eichorst, Stephanie A., Woebken, Dagmar

Journal:

Environmental Microbiology

Year:

2017

Language:

english

File:

PDF, 4.56 MB

english, 2017

23

Ammonia-oxidising archaea living at low pH: Insights from comparative genomics

Herbold, Craig W., Lehtovirta-Morley, Laura E., Jung, Man-Young, Jehmlich, Nico, Hausmann, Bela, Han, Ping, Loy, Alexander, Pester, Michael, Sayavedra-Soto, Luis A., Rhee, Sung-Keun, Prosser, James I.

Journal:

Environmental Microbiology

Year:

2017

Language:

english

File:

PDF, 813 KB

english, 2017

24

Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments

Eichorst, Stephanie A., Trojan, Daniela, Roux, Simon, Herbold, Craig, Rattei, Thomas, Woebken, Dagmar

Journal:

Environmental Microbiology

Year:

2018

Language:

english

File:

PDF, 1.57 MB

english, 2018

25

Draft Genome Sequence of Telmatospirillum siberiense 26-4b1, an Acidotolerant Peatland Alphaproteobacterium Potentially Involved in Sulfur Cycling

Hausmann, Bela, Pjevac, Petra, Schreck, Katharina, Herbold, Craig W., Daims, Holger, Wagner, Michael, Loy, Alexander

Journal:

Genome Announcements

Year:

2018

Language:

english

File:

PDF, 141 KB

english, 2018

26

Peatland Acidobacteria with a dissimilatory sulfur metabolism

Hausmann, Bela, Pelikan, Claus, Herbold, Craig W., Köstlbacher, Stephan, Albertsen, Mads, Eichorst, Stephanie A., Glavina del Rio, Tijana, Huemer, Martin, Nielsen, Per H., Rattei, Thomas, Stingl, Ulri

Journal:

The ISME Journal

Year:

2018

Language:

english

File:

PDF, 2.34 MB

english, 2018

27

Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral waters

Lesaulnier, Celine C., Herbold, Craig W., Pelikan, Claus, Berry, David, Gérard, Cédric, Le Coz, Xavier, Gagnot, Sophie, Niggemann, Jutta, Dittmar, Thorsten, Singer, Gabriel A., Loy, Alexander

Journal:

Year:

2017

Language:

english

File:

PDF, 2.47 MB

english, 2017

28

Groundtruthing Next-Gen Sequencing for Microbial Ecology–Biases and Errors in Community Structure Estimates from PCR Amplicon Pyrosequencing

Lee, Charles K., Herbold, Craig W., Polson, Shawn W., Wommack, K. Eric, Williamson, Shannon J., McDonald, Ian R., Cary, S. Craig, Gilbert, Jack Anthony

Journal:

Year:

2012

Language:

english

File:

PDF, 466 KB

english, 2012

29

Author Correction: Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation

Petersen, Jillian M., Kemper, Anna, Gruber-Vodicka, Harald, Cardini, Ulisse, van der Geest, Matthijs, Kleiner, Manuel, Bulgheresi, Silvia, Mußmann, Marc, Herbold, Craig, Seah, Brandon K. B., Antony, C

Journal:

Nature Microbiology

Year:

2018

Language:

english

File:

PDF, 567 KB

english, 2018

30

Characterization of the First “ Candidatus Nitrotoga” Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria

Kitzinger, Katharina, Koch, Hanna, Lücker, Sebastian, Sedlacek, Christopher J., Herbold, Craig, Schwarz, Jasmin, Daebeler, Anne, Mueller, Anna J., Lukumbuzya, Michael, Romano, Stefano, Leisch, Nikolau

Journal:

Year:

2018

Language:

english

File:

PDF, 3.83 MB

english, 2018

31

Bacillus simplex—A Little Known PGPB with Anti-Fungal Activity—Alters Pea Legume Root Architecture and Nodule Morphology When Coinoculated with Rhizobium leguminosarum bv. viciae

Schwartz, Allison, Ortiz, Irma, Maymon, Maskit, Herbold, Craig, Fujishige, Nancy, Vijanderan, Janahan, Villella, William, Hanamoto, Kayoko, Diener, Andrew, Sanders, Erin, DeMason, Darleen, Hirsch, Ann

Journal:

Year:

2013

Language:

english

File:

PDF, 1.55 MB

english, 2013

32

Benthic microbial communities of coastal terrestrial and ice shelf Antarctic meltwater ponds

Archer, Stephen D. J., McDonald, Ian R., Herbold, Craig W., Lee, Charles K., Cary, Craig S.

Journal:

Frontiers in Microbiology

Year:

2015

Language:

english

File:

PDF, 1.85 MB

english, 2015

33

A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes

Herbold, Craig W., Pelikan, Claus, Kuzyk, Orest, Hausmann, Bela, Angel, Roey, Berry, David, Loy, Alexander

Journal:

Frontiers in Microbiology

Year:

2015

Language:

english

File:

PDF, 2.18 MB

english, 2015

34

Corrigendum: A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes

Herbold, Craig W., Pelikan, Claus, Kuzyk, Orest, Hausmann, Bela, Angel, Roey, Berry, David, Loy, Alexander

Journal:

Frontiers in Microbiology

Year:

2016

Language:

english

File:

PDF, 112 KB

english, 2016

35

AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment

Pjevac, Petra, Schauberger, Clemens, Poghosyan, Lianna, Herbold, Craig W., van Kessel, Maartje A. H. J., Daebeler, Anne, Steinberger, Michaela, Jetten, Mike S. M., Lücker, Sebastian, Wagner, Michael,

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 1.52 MB

english, 2017

36

Cultivation and Genomic Analysis of “Candidatus Nitrosocaldus islandicus,” an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valley, Iceland

Daebeler, Anne, Herbold, Craig W., Vierheilig, Julia, Sedlacek, Christopher J., Pjevac, Petra, Albertsen, Mads, Kirkegaard, Rasmus H., de la Torre, José R., Daims, Holger, Wagner, Michael

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 3.11 MB

english, 2018

37

Evaluation of Primers Targeting the Diazotroph Functional Gene and Development of NifMAP – A Bioinformatics Pipeline for Analyzing nifH Amplicon Data

Angel, Roey, Nepel, Maximilian, Panhölzl, Christopher, Schmidt, Hannes, Herbold, Craig W., Eichorst, Stephanie A., Woebken, Dagmar

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 6.61 MB

english, 2018

38

Distinct Microbial Assemblage Structure and Archaeal Diversity in Sediments of Arctic Thermokarst Lakes Differing in Methane Sources

Matheus Carnevali, Paula B., Herbold, Craig W., Hand, Kevin P., Priscu, John C., Murray, Alison E.

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 2.22 MB

english, 2018

39

Microbial temperature sensitivity and biomass change explain soil carbon loss with warming

Walker, Tom W. N., Kaiser, Christina, Strasser, Florian, Herbold, Craig W., Leblans, Niki I. W., Woebken, Dagmar, Janssens, Ivan A., Sigurdsson, Bjarni D., Richter, Andreas

Journal:

Nature Climate Change

Year:

2018

Language:

english

File:

PDF, 4.66 MB

english, 2018

40

Author Correction: Microbial temperature sensitivity and biomass change explain soil carbon loss with warming

Walker, Tom W. N., Kaiser, Christina, Strasser, Florian, Herbold, Craig W., Leblans, Niki I. W., Woebken, Dagmar, Janssens, Ivan A., Sigurdsson, Bjarni D., Richter, Andreas

Journal:

Nature Climate Change

Year:

2018

File:

PDF, 529 KB

2018

41

The cooling tower water microbiota: Seasonal dynamics and co-occurrence of bacterial and protist phylotypes

Tsao, Han-Fei, Scheikl, Ute, Herbold, Craig, Indra, Alexander, Walochnik, Julia, Horn, Matthias

Journal:

Year:

2019

File:

PDF, 8.80 MB

2019

42

Characterization of a thaumarchaeal symbiont that drives incomplete nitrification in the tropical sponge Ianthella basta

Moeller, Florian U., Webster, Nicole S., Herbold, Craig W., Behnam, Faris, Domman, Daryl, Albertsen, Mads, Mooshammer, Maria, Markert, Stephanie, Turaev, Dmitrij, Becher, Dörte, Rattei, Thomas, Schwed

Journal:

Environmental Microbiology

Year:

2019

Language:

english

File:

PDF, 2.43 MB

english, 2019

43

Characterization of a thaumarchaeal symbiont that drives incomplete nitrification in the tropical sponge Ianthella basta

Moeller, Florian U., Webster, Nicole S., Herbold, Craig W., Behnam, Faris, Domman, Daryl, Albertsen, Mads, Mooshammer, Maria, Markert, Stephanie, Turaev, Dmitrij, Becher, Dörte, Rattei, Thomas, Schwed

Journal:

Environmental Microbiology

Year:

2019

File:

PDF, 2.43 MB

2019

44

A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome

Riva, Alessandra, Kuzyk, Orest, Forsberg, Erica, Siuzdak, Gary, Pfann, Carina, Herbold, Craig, Daims, Holger, Loy, Alexander, Warth, Benedikt, Berry, David

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 2.27 MB

english, 2019

45

Hair eruption initiates and commensal skin microbiota aggravate adverse events of anti-EGFR therapy

Klufa, Jörg, Bauer, Thomas, Hanson, Buck, Herbold, Craig, Starkl, Philipp, Lichtenberger, Beate, Srutkova, Dagmar, Schulz, Daniel, Vujic, Igor, Mohr, Thomas, Rappersberger, Klemens, Bodenmiller, Bernd

Journal:

Science Translational Medicine

Year:

2019

File:

PDF, 1.52 MB

2019

46

Single cell analyses reveal contrasting life strategies of the two main nitrifiers in the ocean

Kitzinger, Katharina, Marchant, Hannah K., Bristow, Laura A., Herbold, Craig W., Padilla, Cory C., Kidane, Abiel T., Littmann, Sten, Daims, Holger, Pjevac, Petra, Stewart, Frank J., Wagner, Michael, K

Journal:

Nature Communications

Year:

2020

File:

PDF, 1.01 MB

2020

47

Abiotic factors influence patterns of bacterial diversity and community composition in the Dry Valleys of Antarctica

Bottos, Eric M, Laughlin, Daniel C, Herbold, Craig W, Lee, Charles K, McDonald, Ian R, Cary, S Craig

Journal:

FEMS Microbiology Ecology

Year:

2020

File:

PDF, 3.66 MB

2020

48

Activity and Metabolic Versatility of Complete Ammonia Oxidizers in Full-Scale Wastewater Treatment Systems

Yang, Yuchun, Daims, Holger, Liu, Yang, Herbold, Craig W., Pjevac, Petra, Lin, Jih-Gaw, Li, Meng, Gu, Ji-Dong, Santoro, Alyson E., Capone, Douglas G.

Journal:

Year:

2020

File:

PDF, 2.11 MB

2020

49

Composition and activity of nitrifier communities in soil are unresponsive to elevated temperature and CO2, but strongly affected by drought

SÃ©neca, Joana, Pjevac, Petra, Canarini, Alberto, Herbold, Craig W., Zioutis, Christos, Dietrich, Marlies, Simon, Eva, Prommer, Judith, Bahn, Michael, PÃ¶tsch, Erich M., Wagner, Michael, Wanek, Wolfga

Journal:

The ISME Journal

Year:

2020

File:

PDF, 1.75 MB

2020

50

Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira

Daebeler, Anne, Kitzinger, Katharina, Koch, Hanna, Herbold, Craig W., Steinfeder, Michaela, Schwarz, Jasmin, Zechmeister, Thomas, Karst, SÃ¸ren M., Albertsen, Mads, Nielsen, Per H., Wagner, Michael, D

Journal:

The ISME Journal

Year:

2020

File:

PDF, 2.03 MB

2020